PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G085000.1
Common NameB456_006G085000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 351aa    MW: 38511.7 Da    PI: 7.2205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G085000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.2e-052392761254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Gorai.006G085000.1 239 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 276
                         677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.503227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-5237280No hitNo description
Gene3DG3DSA:4.10.280.102.5E-8237285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-11237289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK  60
HQQAADSHNN GSSVFIDSSL KMMDFDLSST PDCNQSFQLS CRQEPVAMDS ALLQGLLFEP  120
DAQAQQHSLN FNNRSINHMP AGATYGANAN GILSPPWPKL APFVRPSLPK QLPSSLPLPQ  180
SQVLLQTFEN KLNCPRPTIE TNTKQVRNLA SVMKKGSGEP PLKRPRIETP LPLPTFKVRK  240
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIKFLHDQV NVLSTPYVKQ AAVSIPQGID  300
HRLKDTEGSK QDLRSRGLCL VPISTTFTVA NETTADFWTP AFVGTLSFYT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484674.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A0D2NNQ90.0A0A0D2NNQ9_G
STRINGVIT_00s0274g00070.t011e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2465034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.33e-52bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]